Re: [galaxy-user] NGS RNA-seq

2011-01-24 Thread Jennifer Jackson

Hello Slim,

Would you please share a link to your history (Options -> Share or 
Publish) and I can take a look? You can email me directly with the link.


Best,

Jen
Galaxy team

On 1/24/11 5:47 AM, Slim Sassi wrote:

Hello,
I have followed the steps described by Jeremy in his exercise 
(http://main.g2.bx.psu.edu/u/jeremy/p/galaxy-rna-seq-analysis-exercise) to 
analyze RNA-seq data and all of the steps seemed to go ok except that at the 
end the gene IDs were missing, so for example the file CDS diff file had 
nothing in it. All the steps seemed to be executed correctly with proper 
mapping to various places in the mouse genome.
Please help

Thanks

Slim


Slim O. Sassi, PhD
Research Fellow
Center for Computational and Integrative Biology, Massachusetts General Hospital
Department of Genetics, Harvard Medical School
185 Cambridge Street
CCIB- CPZN 7-7228 Simches Research Center
Boston MA 02114
Phone: (617) 726-5971
Fax: (617) 643-3328
ssa...@ccib.mgh.harvard.edu




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Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org
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[galaxy-user] NGS RNA-seq

2011-01-24 Thread Slim Sassi
Hello,
I have followed the steps described by Jeremy in his exercise 
(http://main.g2.bx.psu.edu/u/jeremy/p/galaxy-rna-seq-analysis-exercise) to 
analyze RNA-seq data and all of the steps seemed to go ok except that at the 
end the gene IDs were missing, so for example the file CDS diff file had 
nothing in it. All the steps seemed to be executed correctly with proper 
mapping to various places in the mouse genome.
Please help

Thanks

Slim


Slim O. Sassi, PhD
Research Fellow
Center for Computational and Integrative Biology, Massachusetts General Hospital
Department of Genetics, Harvard Medical School
185 Cambridge Street
CCIB- CPZN 7-7228 Simches Research Center
Boston MA 02114
Phone: (617) 726-5971
Fax: (617) 643-3328
ssa...@ccib.mgh.harvard.edu




The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.


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