Hi Lanelle,
My initial guess is that the datatype is not set as pileup for your
dataset - a standard, 6 column pileup format dataset. Perhaps you used
the option to generate a consensus pileup with 10 columns? And so the
output is labeled as tabular format? If so, you can cut the first 3
columns and last 3 columns out, paste them together, and assign the
format pileup to use with the downstream filter tool. Tools to do the
Cut/Paste are in the group 'Text Manipulation'.
If the datatype does not explain the issue, please let us know and we
can look into this more. From a quick test I didn't find anything
unusual, but of course we would want to track down any potential bugs,
Best,
Jen
Galaxy team
On 12/5/12 7:34 AM, Lanelle Oni Edwards wrote:
Hello,
I am currently using galaxy main to run a filter pileup on datasets
that used the generate pileup tool. The filter pileup function is not
recognizing any of my generate pileup datasets in the drop-down box so
I cannot even execute the job. I think there may be a problem with
this tool. I would greatly appreciate any help or an update as to when
this tool will be functioning again.
Thank You,
Lanelle Edwards
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