Re: [galaxy-user] Number of mismatches allowed in the initial read mapping

Hello Jianguang, This is in reply to this email and your prior email from yesterday 9/6 subject Tophat settings. The testing here was a very good way to see how parameters impact mapping. In addition, see below ... On 9/6/12 2:32 PM, Du, Jianguang wrote: Dear All, I tested how to set the

[galaxy-user] Number of mismatches allowed in the initial read mapping

Dear All, I tested how to set the Number of mismatches allowed in the initial read mapping as follows. At first, I ran FASTQ Groomer on a dataset to get the number of total reads. The total number of the reads is 17510227. Then I ran Tophat after set Number of mismatches allowed in the