[galaxy-user] Problem with SAM-to-BAM conversion

Hello, I am trying to map Illumina paired-ends reads from the nematode Caenorhabditis briggsae. Here are the steps of my history: 1)I uploaded and groomed two .fq files corresponding to paired-end reads. In the attributes, I choose the cb4 database. 2)I mapped them using BWA (BWA Version:

Re: [galaxy-user] Problem with SAM-to-BAM conversion

-Original Message- From: galaxy-user-boun...@lists.bx.psu.edu [mailto:galaxy-user-boun...@lists.bx.psu.edu] On Behalf Of Fabrice BESNARD Sent: Monday, July 29, 2013 9:58 AM To: galaxy-user@lists.bx.psu.edu Subject: [galaxy-user] Problem with SAM-to-BAM conversion Hello, I am trying to map