[galaxy-user] RV: Visual and Conputational Analysis of positive sites in chip-chip data

2011-11-16 Thread Mónica Pérez Alegre
Hi all We are working with chip-chip data of S. cerevisiae (from Affymetrix) and actually we have two problems and we don´t know if it´s possible to perform in Galaxy: 1. We use the tool intersect to get the annotation of positive genomic regions in our file bed. After, we need calculate

Re: [galaxy-user] RV: Visual and Conputational Analysis of positive sites in chip-chip data

2011-11-16 Thread Abhay Krishna
I think closest to what you want to do in galaxy can be done in cistrome http://wiki.g2.bx.psu.edu/Community/Cistrome Unless I am missing some galaxy tool in testing, which other galaxy users more closely following galaxy test can comment on best Abhay 2011/11/16 Mónica Pérez Alegre

Re: [galaxy-user] RV: Visual and Conputational Analysis of positive sites in chip-chip data

2011-11-16 Thread shamsher jagat
I dont think Cistrome can provide sufficient visualization options. In CEAS analysis it can provide overall picture of genome binding regions or some relative binding histograms. I beleive what Monica is asking when one has chip enriched regions how to visualize such selected regions- I will