Re: [galaxy-user] Rscript not found when running shell script in Galaxy

2013-02-14 Thread Bossers, Alex
helps. Alex Van: galaxy-user-boun...@lists.bx.psu.edu [mailto:galaxy-user-boun...@lists.bx.psu.edu] Namens Makis Ladoukakis Verzonden: dinsdag 12 februari 2013 11:54 Aan: galaxy-user@lists.bx.psu.edu Onderwerp: [galaxy-user] Rscript not found when running shell script in Galaxy Dear users, Has

Re: [galaxy-user] Rscript not found when running shell script in Galaxy

2013-02-12 Thread Carlos Borroto
On Tue, Feb 12, 2013 at 5:54 AM, Makis Ladoukakis wrote: > Dear users, > > Has anyone encountered this problem before? I wrote a shell script which > among other things calls some R scripts like this.. > > Rscript rscript_to_use.R > > When I run it via terminal it's fine plus I have verified Rscri

[galaxy-user] Rscript not found when running shell script in Galaxy

2013-02-12 Thread Makis Ladoukakis
Dear users, Has anyone encountered this problem before? I wrote a shell script which among other things calls some R scripts like this.. Rscript rscript_to_use.R When I run it via terminal it's fine plus I have verified Rscript works. But when I upload my tool to Galaxy and try to run it I g