How do people on this mailing list usually visualize Tophat and/or
Cufflinks results (eg. tracks on UCSC browser)?
I have only this once before, and I started with a .wig file that I
uploaded to the genome browser, however it looks like Tophat does not give
any .wig file in the output.
Hi Alessia,
Shamsher is correct, Trackster is a great choice for viewing data.
The Galaxy Track Browser (aka Trackster) has several new features and
more coming up in the next few weeks at the Main instance. This tutorial
covers a basic RNA-seq analysis that includes visualization:
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