Re: [galaxy-user] Tophat results

2012-09-13 Thread Jennifer Jackson
Hello Xiefan, On 9/10/12 12:16 PM, Xiefan Fang wrote: Dear galaxy users, I aligned my RNA-seq data by using Tophat in galaxy. It generated some “Tophat deletions”, “Tophat insertions” and “Tophat splice junctions” results. These are all BED files. Does anyone know how to use/analyze thes

[galaxy-user] Tophat results

2012-09-10 Thread Xiefan Fang
Dear galaxy users, I aligned my RNA-seq data by using Tophat in galaxy. It generated some "Tophat deletions", "Tophat insertions" and "Tophat splice junctions" results. These are all BED files. Does anyone know how to use/analyze these kind of results? Also, I used illumina RNA-seq. E