Re: [galaxy-user] Troubles with Bowtie alignement of sRNA dataset (against precursor of mirBase)

2011-08-01 Thread Jennifer Jackson
Hello Christian, I found this FAQ on the IGV web site. They may be the best resource for resolving display issues if they continue. Comparing results between IGV and Galaxy's visualization tool Trackster can help you to determine the root cause of the problem.

[galaxy-user] Troubles with Bowtie alignement of sRNA dataset (against precursor of mirBase)

2011-07-31 Thread Cristian Rojas
Hi people, I have a litle problem with Bowtie alignments. I am tryin to align sRNA Illumina dataset to hairpin mirbase. The problem is that after the steps (detailed below) I only obtain reads of 15-18nt, and I know that I have a lot of microRNAs (20-22nt) in my data. Beside the size problem,