Re: [galaxy-user] Which tool to use for extract exon, codon information

2013-12-11 Thread Jennifer Jackson
Hi Keith, The first protocol in this paper does a very similar task. Just maybe skip the parts where you do the counts, instead use the merged file. If you note, the "name" of the exons includes the transcript, the coordinates, and the exon's position in the transcript. https://usegalaxy.org/

[galaxy-user] Which tool to use for extract exon, codon information

2013-12-11 Thread Tomaszewicz, Keith
Hi, I am new to galaxy but I think your tools may be what I need. I simply have a .bed file with amplicons and their chromosome, start and stop location in the human genome. I simply want to align the .bed file amplicons to the HG19 and have a file I can export that which will tell me what e