[galaxy-user] bed file to gene list

Can anyone point me to a good workflow to convert my ChIP-seq data intervals to gene names. My peaks fall both within genes and within intergenic areas. Thanks, Chris Christopher Futtner, Ph.D. Dept. of Surgery Duke University Durham, NC 27710 email: christopher.futt...@duke.edu phone:

Re: [galaxy-user] bed file to gene list

Hello, There is no general workflow, primarily because there is no single source of gene annotation and some formatting may be necessary. But once that part is resolved, using a single tool in Operate on Genomic Intervals can most often assign gene names to query genome regions. The first