Re: [galaxy-user] configuring apache proxy server issue

[John Jones]

Are the permissions on /usr/local/apache/htdocs/galaxy correct? (ie, are
they readable by the apache user account).

On  4 August 2011 20:55, Sridhar A Malkaram  wrote:

> Hi,
>
> I have been using galaxy succesfully for my work using its internal
> web-server. Recently I wanted to use it over the internet and so, I
> configured it with apache at /galaxy of apache's root. I followed all the
> instructions in setting up the proxy redirection. But I think the
> re-direction is not happening. I highly appreciate any suggestions to
> correct the issue.
>
> I checked for the mod_proxy, mod_proxy_http etc modules and they are
> present and switched on.
>
> Apache gives the following error in its error_log file:
>
> [Thu Aug 04 14:15:56 2011] [error] [client 127.0.0.1] File does not exist:
> /usr/local/apache/htdocs/galaxy
>
> Galaxy was set up in the directory /home/galaxy/galaxy-dist
> The lines specific for proxy setting in  universe_wsgi.ini  are as follows:
> use = egg:Paste#http
> port = 8080
> host = localhost
> [filter:proxy-prefix]
> use = egg:PasteDeploy#prefix
> prefix = /galaxy
> [app:main]
> filter-with = proxy-prefix
> cookie_path = /galaxy
> use_remote_user = True
> remote_user_maildomain = unl.edu
>
> httpd.conf settings:
>
> RewriteEngine on
> http://localhost:8080>
>Order deny,allow
>Allow from all
> 
> 
>Order deny,allow
>Allow from all
># Take the $REMOTE_USER environment variable and set it as a header in
> the proxy request.
>RewriteCond %{IS_SUBREQ} ^false$
>RewriteCond %{LA-U:REMOTE_USER} (.+)
>RewriteRule . - [E=RU:%1]
>RequestHeader set REMOTE_USER %{RU}e
>RequestHeader set X-URL-SCHEME https
>RewriteRule ^/galaxy$ /galaxy/ [R]
>RewriteRule ^/galaxy/(.*) http://localhost:8080/$1 [P]
># Compress all uncompressed content.
>SetOutputFilter DEFLATE
>SetEnvIfNoCase Request_URI \.(?:gif|jpe?g|png)$ no-gzip dont-vary
>SetEnvIfNoCase Request_URI \.(?:t?gz|zip|bz2)$ no-gzip dont-vary
> 
>
>
>
>
> Thanks,
>
>
> ___
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> please use the interface at:
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>
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Re: [galaxy-user] configuring apache proxy server issue

[Jennifer Jackson]

Hello,

I am going to move this over to the galaxy-dev list so that the larger 
development community can more easily access your question and provide 
some feedback.


Thanks!

Jen
Galaxy team

On 8/4/11 12:55 PM, Sridhar A Malkaram wrote:

Hi,

I have been using galaxy succesfully for my work using its internal
web-server. Recently I wanted to use it over the internet and so, I
configured it with apache at /galaxy of apache's root. I followed all
the instructions in setting up the proxy redirection. But I think the
re-direction is not happening. I highly appreciate any suggestions to
correct the issue.

I checked for the mod_proxy, mod_proxy_http etc modules and they are
present and switched on.

Apache gives the following error in its error_log file:

[Thu Aug 04 14:15:56 2011] [error] [client 127.0.0.1] File does not
exist: /usr/local/apache/htdocs/galaxy

Galaxy was set up in the directory /home/galaxy/galaxy-dist
The lines specific for proxy setting in  universe_wsgi.ini  are as follows:
use = egg:Paste#http
port = 8080
host = localhost
[filter:proxy-prefix]
use = egg:PasteDeploy#prefix
prefix = /galaxy
[app:main]
filter-with = proxy-prefix
cookie_path = /galaxy
use_remote_user = True
remote_user_maildomain = unl.edu 

httpd.conf settings:

RewriteEngine on
http://localhost:8080>
Order deny,allow
Allow from all


Order deny,allow
Allow from all
# Take the $REMOTE_USER environment variable and set it as a header
in the proxy request.
RewriteCond %{IS_SUBREQ} ^false$
RewriteCond %{LA-U:REMOTE_USER} (.+)
RewriteRule . - [E=RU:%1]
RequestHeader set REMOTE_USER %{RU}e
RequestHeader set X-URL-SCHEME https
RewriteRule ^/galaxy$ /galaxy/ [R]
RewriteRule ^/galaxy/(.*) http://localhost:8080/$1 [P]
# Compress all uncompressed content.
SetOutputFilter DEFLATE
SetEnvIfNoCase Request_URI \.(?:gif|jpe?g|png)$ no-gzip dont-vary
SetEnvIfNoCase Request_URI \.(?:t?gz|zip|bz2)$ no-gzip dont-vary





Thanks,



___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
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use the Galaxy Development list:

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please use the interface at:

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--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/Support
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

 http://lists.bx.psu.edu/listinfo/galaxy-dev

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please use the interface at:

 http://lists.bx.psu.edu/

[galaxy-user] configuring apache proxy server issue

[Sridhar A Malkaram]

Hi,

I have been using galaxy succesfully for my work using its internal
web-server. Recently I wanted to use it over the internet and so, I
configured it with apache at /galaxy of apache's root. I followed all the
instructions in setting up the proxy redirection. But I think the
re-direction is not happening. I highly appreciate any suggestions to
correct the issue.

I checked for the mod_proxy, mod_proxy_http etc modules and they are present
and switched on.

Apache gives the following error in its error_log file:

[Thu Aug 04 14:15:56 2011] [error] [client 127.0.0.1] File does not exist:
/usr/local/apache/htdocs/galaxy

Galaxy was set up in the directory /home/galaxy/galaxy-dist
The lines specific for proxy setting in  universe_wsgi.ini  are as follows:
use = egg:Paste#http
port = 8080
host = localhost
[filter:proxy-prefix]
use = egg:PasteDeploy#prefix
prefix = /galaxy
[app:main]
filter-with = proxy-prefix
cookie_path = /galaxy
use_remote_user = True
remote_user_maildomain = unl.edu

httpd.conf settings:

RewriteEngine on
http://localhost:8080>
   Order deny,allow
   Allow from all


   Order deny,allow
   Allow from all
   # Take the $REMOTE_USER environment variable and set it as a header in
the proxy request.
   RewriteCond %{IS_SUBREQ} ^false$
   RewriteCond %{LA-U:REMOTE_USER} (.+)
   RewriteRule . - [E=RU:%1]
   RequestHeader set REMOTE_USER %{RU}e
   RequestHeader set X-URL-SCHEME https
   RewriteRule ^/galaxy$ /galaxy/ [R]
   RewriteRule ^/galaxy/(.*) http://localhost:8080/$1 [P]
   # Compress all uncompressed content.
   SetOutputFilter DEFLATE
   SetEnvIfNoCase Request_URI \.(?:gif|jpe?g|png)$ no-gzip dont-vary
   SetEnvIfNoCase Request_URI \.(?:t?gz|zip|bz2)$ no-gzip dont-vary





Thanks,
___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/