Hello Laura,
The ENCODE data is available via FTP hosted by UCSC. This is the main
portal:
http://genome.ucsc.edu/ENCODE/
Follow the downloads link, then scroll down to the RNA-seq tracks. Click
on the tracks you are interested in to locate the directories containing
both the UCSC tracks and the source fastq data.
Once local to your computer, load into Galaxy in batch as a Data
Library, then import datasets from libraries into histories to work with
them. Data Library instructions are in our wiki. Because of the size of
the data, you will most likely want to use the "Upload directory of
files" option explained in the second link, once your environment is
configured.
http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Libraries
http://wiki.g2.bx.psu.edu/Admin/Data%20Libraries/Uploading%20Library%20Files
Hopefully this helps!
Jen
Galaxy team
On 10/16/12 1:44 PM, laura lafontaine wrote:
Hi everyone,
I'm new in Galaxy and I want to know if is possible download whole
rna-seq data from ENCODE project to my local galaxy instance (I have a
disk of 5 To) . If yes, would you explain me how I can do this?
Thank you in advance for your answer,
L
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The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
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To manage your subscriptions to this and other Galaxy lists,
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