Hi, I run a very regular BWA mapping with a public reference genome sequence and then I tried to do some variant analysis with both mpileup and freeBayes tools. These jobs run just fine, but then when I went to convert these files to a .maf format or using the bcf2vcf converter there were errors in the metadata and the jobs couldn't run. One main error in the freeBayes output gave the exception: "components must have same text length". I also tried to run some vcf to maf converter from command line (python tool) on the downloaded file and also didn't work. Any suggestion on what's wrong with the file? thanks stefano ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
