Austin,
See this discussion for ideas about how to generate partial and full coverage
data from a Tophat BAM file:
http://gmod.827538.n3.nabble.com/get-wig-file-after-tophat-td2547963.html#a2548359
Short answer: use the pileup tool for partial coverage (i.e. coverage for all
bases that have ma
Hi,
I would like to extract raw counts from tophat output. Does anyone know a
way to do this in Galaxy?
Thanks!
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