Re: [galaxy-user] galaxy with cuffdiff output

2011-08-25 Thread chenyao . bioinfor
===> Please use "Reply All" when responding to this email! <=== Hi Jen, I use tophat to align the RNA-seq data, then use cufflink ,cuffcompare and cuffdiff with a reference GTF fileto find differential expressed non-coding RNA. But I don't know what is non-coding RNA track in the output file s

Re: [galaxy-user] galaxy with cuffdiff output

2011-08-25 Thread Jennifer Jackson
===> Please use "Reply All" when responding to this email! <=== > ===> Please use "Reply All" when responding to this email!<=== Hello, Without seeing your work history, it is difficult to know exactly which steps/options are being used with the RNA-seq tools. However, I can let you know t

[galaxy-user] galaxy with cuffdiff output

2011-08-25 Thread 姚晨
===> Please use "Reply All" when responding to this email! <=== Dear all, I use cuffdiff in galaxy net version. The output are isoform.diff , gene.diff ...etc, but I want to find the differential expressed non-coding RNAs. How can I get these information? Thank you Chen Yao ___