[galaxy-user] how to view the Tophat output ?

Hi , I have installed our local galaxy and tried to run some programs. I have run the Tophat with RNA-seq data. There are two output files: accepted_hits, and splice_junctions. Can you tell me how to view the results files? Is there a tool on galaxy that can be used to view the result ? Can I

[galaxy-user] how to view the tophat output ?

Hi , I have installed our local galaxy and tried to run some programs. I have run the Tophat with RNA-seq data. There are two output files: accepted_hits, and splice_junctions. Can you tell me how to view the results files? Is there a tool on galaxy that can be used to view the result ? Can I

Re: [galaxy-user] how to view the Tophat output ?

Hello Jianpeng, Please see step #2 in the RNA-seq tutorial for visualization help: https://main.g2.bx.psu.edu/u/jeremy/p/galaxy-rna-seq-analysis-exercise For IGV and other external applications, these links will appear inside dataset boxes that have database/datatype identifiers that meet the

Re: [galaxy-user] how to view the Tophat output ?

Just to add, Trackster is pretty awesome for RNA-seq data and well worth learning to use. If you also want to see it in IGV you can load the BAM and gtf files, but you will have to download gtf files to your local drive, then load them from the file menu. You can view the Bam without