Hello Kathryn,
This is occurring on your local Galaxy install? Have you installed the
actual MACS tool and set up the proper configuration paths? Details for
how to do this are in these wikis:
http://wiki.galaxyproject.org/Admin/Config/Tool%20Dependencies
http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies
Apart from that, I should let you know that prior to running MACS,
groomed fastq datasets first need to be mapped. An example can be found
in our Using Galaxy paper, protocol #3. Links to the paper and
supplemental materials (including a screencast walk-through) are
available here:
https://main.g2.bx.psu.edu/u/galaxyproject/p/using-galaxy-2012
If you need more help with your local install, directing questions to
the galaxy-...@bx.psu.edu mailing list would be best,
Thanks!
Jen
Galaxy team
On 1/10/13 1:14 PM, Sun, Wenping [USA] wrote:
Dear galaxy users,
I've encountered the error while running macs on galaxy for chipseq
data. I used fastq groomed files as input and had the following error
An error occurred running this job: //bin/sh: macs: not found/
//
Anybody can kindly provide some hints?
Thanks,
Kathryn
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
