, November 15, 2013 10:23 PM
To: Johanna Sandgren
Cc: galaxy-user@lists.bx.psu.edu; Jeremy Goecks
Subject: Re: [galaxy-user] new cuffdiff with readgroup problem
Hi Johanna,
Update: I had this incorrect, the option to include Read Group files in the
output is now available and near the bottom
@lists.bx.psu.edu; Jeremy Goecks
*Subject:* Re: [galaxy-user] new cuffdiff with readgroup problem
Hello Johanna,
Last time I checked, this specific functionality was not fully
implemented yet. I do not believe that a firm timeline has been set
yet for completion.
Jeremy can comment if I have
:* Re: [galaxy-user] new cuffdiff with readgroup problem
Hello Johanna,
Last time I checked, this specific functionality was not fully
implemented yet. I do not believe that a firm timeline has been set
yet for completion.
Jeremy can comment if I have this incorrect, but I wanted to get back
for replicate plotting in
CummeRbund then? When will you also include them in your output?
Regards,
Johanna
From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: Thursday, October 31, 2013 4:09 AM
To: Johanna Sandgren
Cc: galaxy-user@lists.bx.psu.edu; Jeremy Goecks
Subject: Re: [galaxy-user] new cuffdiff
Hello Johanna,
Last time I checked, this specific functionality was not fully
implemented yet. I do not believe that a firm timeline has been set yet
for completion.
Jeremy can comment if I have this incorrect, but I wanted to get back to
you so that you were not wondering!
Take care,
Hi,
I have tested the new cuffdiff version in galaxy and was very eager to now also
get the replicate data for each test. Have anyone tried that yet and succeeded
with replicates in downstream R package CummeRbund? Even though I successfully
build database with the now 15 output files
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