Hi Kanwar,
This tool in Galaxy uses the same expressions as the line command
version (to my knowledge). A list of the possible expressions is listed
here. The parenthesis are optional when there is just a single expression.
http://snpeff.sourceforge.net/SnpSift.html#filter
Hopefully this helps,
Jen
Galaxy team
On 12/30/13 2:58 PM, shamsher jagat wrote:
I have a VCF file and I want to filter it for nonsynonymous/ deletion/
insertion seq variations. Once I filter this file and compare between
tumor vs normal samples and then annotate such variations. I believe
I can filter this file using SnpSift and then can annotate with
SnpEff, When I try to use Snsift filter it just says arbitrary
expression. Are there rules how to use expression for a particular
filter with in galaxy. If any one has used SnpSift in galaxy may
share their expertise.
Thanks
Kanwar
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The Galaxy User list should be used for the discussion of
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using reply all in your mail client. For discussion of
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