Hello Giuseppe,
Please try two things:
1. At the top of the history panel is a small double arrow refresh
icon. Click this to see if it updates the view. If not, click on the
very top Galaxy masthead icon. This should not be necessary any
longer, but try it anyway.
2. Double check that the
Hi Maria,
This message indicates that an error occurred on the cluster node
processing the job. Normally these are not linked to inputs or tools and
the general solution is to re-run the job. Please give this a try today
- it is possible the error was linked to recent transient server issues.
Cuffmerge does some additional steps that Cuffcompare does not; specifically,
Cuffmerge attempts to remove assembly artifacts:
http://cufflinks.cbcb.umd.edu/manual.html#cuffmerge It's likely that the
(presumed) artifacts removed by Cuffmerge account for the differences that
you're seeing.
Security warning: DO NOT CLICK on the link in this thread.
Eric Guo - it is likely that your original sending hotmail email account
has been compromised. We have removed it from the galaxy-u...@bx.psu.edu
mailing list to prevent further unmoderated posts until the problem is
cleared.
Kristis,
This data is available further downstream in an RNA-seq analysis pipeline,
specifically, as output from the Cuffdiff tool. Take a look at the page for
more details:
https://main.g2.bx.psu.edu/rna-seq
Best,
J.
On Nov 9, 2012, at 3:42 AM, Vevis, Christis wrote:
Hi,
I am
Hi Megan,
I ran a few tests and found that changing the file suffix to .txt when
using the autodetect upload type function speed up the loading process
considerably. As the final result is an identical Galaxy dataset to what
is produced with using the existing suffix, this is something I
Hello Megan,
Are you still experiencing problems now? Galaxy may have been busy
immediately following the resolution of the cluster problem, although
your problem does appear to be unrelated.
It sounds like you are uploading file through a browser. A better choice
would be to use FTP. This
Hello Tarek,
If you want to reduce the number of identical reads, then please see the
tool FASTA manipulation - Collapse sequences. Converting formats
would be necessary, the tool Tabular-to-FASTA can perform this operation.
Best,
Jen
Galaxy team
On 8/2/11 3:57 PM, tarek addwebi wrote:
Aaron,
As far as I remember MIRAisn't MIRA taking into account the low/high
quality bases anyway? So no need to filter there right?
Only filtering needed is for contaminating sequences.(incl adapters and
such). You can/have to check the MIRA website to be sure though.
The high qual
On Tue, May 24, 2011 at 12:40 AM, Aaron Jex a...@unimelb.edu.au wrote:
Hi,
Can’t seem to find an answer to this on your wiki site and it’s not in the
tutorial. I would like to filter my 454 reads for high quality regions,
rename the resulting sequence fragments AND relink the new reads
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