Re: [galaxy-user] [galaxy-dev] Urgent help needed

2011-12-06 Thread Dannon Baker
I don't know anything about the tool or parameters in question , but it looks like the expected output filename is well formatted enough that you can derive it from the input filename and parameters. You could write a small python wrapper to grant you full control over manipulating output

Re: [galaxy-user] [galaxy-dev] Urgent help needed

2011-12-05 Thread Dannon Baker
Toqa, Just to make sure I've understood your question: the problem is that a tool that you're trying to wrap doesn't provide a way to specify a particular output filename? Take a look at the from_work_dir attribute of a data element. Or are you asking how to define outputs in general? For