*Cc:* "galaxy-user@lists.bx.psu.edu"
*Sent:* Monday, September 10, 2012 11:32 AM
*Subject:* Re: [galaxy-user] Adding a custom genome for using MACS in Galaxy
Hello Mathew,
If you already have mapped your data, then you can just upload the
BAM/SAM dataset(s), sort if necessary, leave th
for bacterial
genes under any other tool in galaxy.
Thanks
Mathew
From: Jennifer Jackson
To: Mathew Bunj
Cc: "galaxy-user@lists.bx.psu.edu"
Sent: Monday, September 10, 2012 11:32 AM
Subject: Re: [galaxy-user] Adding a custom genome for using MACS
Hello Mathew,
If you already have mapped your data, then you can just upload the
BAM/SAM dataset(s), sort if necessary, leave the database unassigned,
and run MACS. This workflow has an example of how to sort a BAM file and
send to MACS - you don't have to use this exactly, in fact the setting
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