Re: [galaxy-user] Adding new tools in Galaxy
Makais, Any type of command line tool, whether script or a binary executable, can be used by Galaxy as long as it's properly installed on the system and accessible to the Galaxy user. See http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#A.3Ccommand.3E_tag_set for more details on how you might call a compiled executable. Thanks for using Galaxy, -Dannon On Oct 6, 2011, at 7:44 AM, Makis Ladoukakis wrote: > Dear Galaxy developers, > > Currently I am adding new tools to my galaxy instance as scripts written in > Perl language. I was wandering if there is a way to add tools either as .bin > or .exe format or if only scripts are supported. I couldn't find anything > about it in the wiki or in the FAQ. > > Thank you, > Makis Ladoukakis > ___ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
Re: [galaxy-user] Adding new tools in Galaxy
Makais, Any type of command line tool, whether script or a binary executable, can be used by Galaxy as long as it's properly installed on the system and accessible to the Galaxy user. See http://wiki.g2.bx.psu.edu/Admin/Tools/Tool%20Config%20Syntax#A.3Ccommand.3E_tag_set for more details on how you might call a compiled executable. Thanks for using Galaxy, -Dannon On Oct 6, 2011, at 7:44 AM, Makis Ladoukakis wrote: > Dear Galaxy developers, > > Currently I am adding new tools to my galaxy instance as scripts written in > Perl language. I was wandering if there is a way to add tools either as .bin > or .exe format or if only scripts are supported. I couldn't find anything > about it in the wiki or in the FAQ. > > Thank you, > Makis Ladoukakis > ___ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ ___ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
