Thanks Björn for the information and the links :)
I'm going to investigate galaxy and see if I can resolve the doubts.
Cheers,
Jorge
Subject: Re: [galaxy-user] Blast on Galaxy?
From: bjoern.gruen...@pharmazie.uni-freiburg.de
To: braun_...@hotmail.com
CC: galaxy-user@lists.bx.psu.edu
Date: Sun, 17 Nov 2013 21:16:55 +0100
Hi Jorge,
My name is J.Braun and I am a new user of galaxy... It is a great tool
for biologists. I have some questions and I would appreciate you could
help me.
1) can I make a blast in Galaxy?
Yes!
2) If so, can I download blast in galaxy?
Yes!
3) If so, can I set up blast in my galaxy for analysis with only a
particular species?
Yes!
But you need a local Galaxy instance, or a Galaxy instance where you can
convince the administrator to install the Blast Tools.
To install the Blast tools you can use the Tool Shed:
http://wiki.galaxyproject.org/Tool%20Shed
Here is the repository:
http://toolshed.g2.bx.psu.edu/view/devteam/ncbi_blast_plus
You can put arbitrary blast databases into Galaxy (have a look at the
location files - *.loc), you also can create your own databases with
Galaxy and search against that.
Cheers,
Bjoern
Thank you very much
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The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using reply all in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
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To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
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