Re: [galaxy-user] Cufflinks related problem

2012-02-22 Thread Noa Sher
a Sher To: Bomba Dam Cc: galaxy-user@lists.bx.psu.edu Sent: Wednesday, February 22, 2012 7:28 AM Subject: Re: [galaxy-user] Cufflinks related p

Re: [galaxy-user] Cufflinks related problem

2012-02-22 Thread Ateequr Rehman
Ateeq   From: Noa Sher To: Bomba Dam Cc: galaxy-user@lists.bx.psu.edu Sent: Wednesday, February 22, 2012 7:28 AM Subject: Re: [galaxy-user] Cufflinks related problem Hi Bomba I cant know for sure without seeing your files but I originally had the same problem and it ended up being b

Re: [galaxy-user] Cufflinks related problem

2012-02-21 Thread Noa Sher
Hi Bomba I cant know for sure without seeing your files but I originally had the same problem and it ended up being because the way the genome was named in the fasta genome file was not the same as the way it was named in column 1 of my gtf file. I would check that