Re: [galaxy-user] Data Uploading through FTP

2014-03-14 Thread Martin Čech
Hello Scott,

there is no 'new Galaxy' that has changed the way upload works. If you were
able to upload files before the February release just follow the same path.
The only thing that evolved is that we added another way to upload files
that we are planning to replace the old one with - but that will happen in
the future.

So to reiterate once more: You can use the 'old upload' that is intact
under Get Data / Upload File on the usegalaxy.org server if you have
trouble using the new one.

If you have trouble using the new one please post a specific question about
it.

Please do not reply to other threads with an unrelated question.

Thank you

Martin




On Fri, Mar 14, 2014 at 11:24 AM, Scott Tighe scott.ti...@uvm.edu wrote:


  Hi Galaxy List

 If anybody has some insight as to how to upload data to the new Galaxy, I
 sure would enjoy hearing the trick.

 Scott

 Scott Tighe
 Senior Core Laboratory Research Staff
 Advanced Genome Technologies Core
 NextGen Sequencing/Flow Cytometry
 University of Vermont and Vermont Cancer Center
 149 Beaumont ave
 Health Science Research Facility 303/305
 Burlington Vermont 05405
 802-656-2482 (AGTC)

 On 3/14/2014 10:25 AM, Jennifer Jackson wrote:

 Hi Elvio,

 Peter is correct - you can manage any list membership through the
 mailman web pages.

 I found you only on this list and unsubscribed you. If you want to
 instead consider the galaxy-announce mailing list (low volume, general
 project updates), links for how to sign up are on this wiki:
 https://wiki.galaxyproject.org/MailingLists

 Best,

 Jen
 Galaxy team

 On 3/14/14 2:58 AM, Elvio Pederzolli wrote:

 Hi there can you please unsubscribe me from all Galaxy lists please

 Thank you

 Elvio Pederzolli

 Sent from my iPad
 ___
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:

http://lists.bx.psu.edu/listinfo/galaxy-dev

 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:

http://lists.bx.psu.edu/

 To search Galaxy mailing lists use the unified search at:

http://galaxyproject.org/search/mailinglists/



 ___
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:

  http://lists.bx.psu.edu/

 To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/


 ___
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:

  http://lists.bx.psu.edu/

 To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

___
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using reply all in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

To manage your subscriptions to this and other Galaxy lists,
please use the interface at:

  http://lists.bx.psu.edu/

To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/

Re: [galaxy-user] Data Uploading through FTP

2014-03-14 Thread Martin Čech
Scott:

15GB file is a candidate for a FTP upload because web browsers can't
usually handle this size. FTP server address is usegalaxy.org and
credentials are the same you use for Galaxy (you have to use some other
client outside of web browser to connect to this FTP server and upload this
large file successfully e.gg FileZilla). After you finish uploading your
file there you will see it in the upload tool (Get Data / Upload File) on
Galaxy (when logged in). Then you will be able to start using it in
history.

There is an awesome screencast that shows the full process here:
http://vimeo.com/75938324

Martin


On Fri, Mar 14, 2014 at 1:48 PM, Scott Tighe scott.ti...@uvm.edu wrote:

  Martin

 One other thing. I believe you are incorrect about uploading using the
 usegalaxy.org page with a 15 gb file. That I believe that is a mistake by
 the Galaxy team. Maybe a clear tutorial on how to upload a 15gb file would
 be nice.

 Thanks Again

 Scott



 Scott Tighe Senior Core Laboratory Research Staff Advanced Genome
 Technologies Core NextGen Sequencing/Flow Cytometry University of Vermont
 and Vermont Cancer Center 149 Beaumont ave Health Science Research Facility
 303/305 Burlington Vermont 05405 802-656-2482 (AGTC)On 3/14/2014 12:52 PM,
 Martin Čech wrote:

 Hello Scott,

  there is no 'new Galaxy' that has changed the way upload works. If you
 were able to upload files before the February release just follow the same
 path. The only thing that evolved is that we added another way to upload
 files that we are planning to replace the old one with - but that will
 happen in the future.

  So to reiterate once more: You can use the 'old upload' that is intact
 under Get Data / Upload File on the usegalaxy.org server if you have
 trouble using the new one.

  If you have trouble using the new one please post a specific question
 about it.

  Please do not reply to other threads with an unrelated question.

  Thank you

  Martin




 On Fri, Mar 14, 2014 at 11:24 AM, Scott Tighe scott.ti...@uvm.edu wrote:


  Hi Galaxy List

 If anybody has some insight as to how to upload data to the new Galaxy,
 I sure would enjoy hearing the trick.

 Scott

 Scott Tighe
 Senior Core Laboratory Research Staff
 Advanced Genome Technologies Core
 NextGen Sequencing/Flow Cytometry
 University of Vermont and Vermont Cancer Center
 149 Beaumont ave
 Health Science Research Facility 303/305
 Burlington Vermont 05405
 802-656-2482 (AGTC)

 On 3/14/2014 10:25 AM, Jennifer Jackson wrote:

 Hi Elvio,

 Peter is correct - you can manage any list membership through the
 mailman web pages.

 I found you only on this list and unsubscribed you. If you want to
 instead consider the galaxy-announce mailing list (low volume, general
 project updates), links for how to sign up are on this wiki:
 https://wiki.galaxyproject.org/MailingLists

 Best,

 Jen
 Galaxy team

 On 3/14/14 2:58 AM, Elvio Pederzolli wrote:

 Hi there can you please unsubscribe me from all Galaxy lists please

 Thank you

 Elvio Pederzolli

 Sent from my iPad
 ___
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:

http://lists.bx.psu.edu/listinfo/galaxy-dev

 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:

http://lists.bx.psu.edu/

 To search Galaxy mailing lists use the unified search at:

http://galaxyproject.org/search/mailinglists/



 ___
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:

  http://lists.bx.psu.edu/

 To search Galaxy mailing lists use the unified search at:

  http://galaxyproject.org/search/mailinglists/


 ___
 The Galaxy User list should be used for the discussion of
 Galaxy analysis and other features on the public server
 at usegalaxy.org.  Please keep all replies on the list by
 using reply all in your mail client.  For discussion of
 local Galaxy instances and the Galaxy source code, please
 use the Galaxy Development list:

  http://lists.bx.psu.edu/listinfo/galaxy-dev

 To manage your subscriptions to this and other Galaxy lists,
 please use the interface at:

  http://lists.bx.psu.edu/

 To search Galaxy mailing lists use the unified search at: