Re: [galaxy-user] Flagstat crashes in non-linear workflows with TORQUE

2011-06-03 Thread Nate Coraor
Louise-Amélie Schmitt wrote: > Le 06/04/2011 13:57, Nate Coraor a écrit : > >Louise-Amélie Schmitt wrote: > >>Hello everyone > >> > >>I observed an issue when flagstat is incorporated in a workflow in which > >>the BAM file it works on is also used by another program (generate > >>pileup for instan

Re: [galaxy-user] Flagstat crashes in non-linear workflows with TORQUE

2011-06-03 Thread Louise-Amélie Schmitt
Le 06/04/2011 13:57, Nate Coraor a écrit : Louise-Amélie Schmitt wrote: Hello everyone I observed an issue when flagstat is incorporated in a workflow in which the BAM file it works on is also used by another program (generate pileup for instance) and is NOT the input dataset (generated by sam

Re: [galaxy-user] Flagstat crashes in non-linear workflows with TORQUE

2011-04-06 Thread Nate Coraor
Louise-Amélie Schmitt wrote: > Hello everyone > > I observed an issue when flagstat is incorporated in a workflow in which > the BAM file it works on is also used by another program (generate > pileup for instance) and is NOT the input dataset (generated by sam to > bam within the workflow). > >