Hi Slim,
The tool is working correctly as we have it implemented right now, but
there is some room for improvement. We are adding some tuning to our
near-term to do list. Thanks for the suggestion!
Best,
Jen
Galaxy team
On 4/5/11 9:31 AM, Slim Sassi wrote:
Hello,
I tried to use NGS: SAM To
On Apr 5, 2011 1:05 PM, "Slim Sassi" wrote:
>
> Sean,
> You are correct, I did use tophat. Can you or anyone suggest a program
for BAM/SAM stats where the alignment was done with tophat
>
Slim,
What stats do you want to capture? The output you gave for flagstats is
correct for single-end topha
Sean,
You are correct, I did use tophat. Can you or anyone suggest a program for
BAM/SAM stats where the alignment was done with tophat
Thanks
Slim
On Apr 5, 2011, at 12:51 PM, Sean Davis wrote:
> Hi, Slim.
>
> My guess is that you used an aligner that outputs only aligned reads
> (tophat, for
Hi, Slim.
My guess is that you used an aligner that outputs only aligned reads
(tophat, for example) and that the input was single-ended. If that is
the case, then what you see below is exactly as expected. If not,
then you might need to be more specific about how you generated the
BAM file.
Se
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