Hello,
Instructions for including a new genome indexed for tools, including how
to download the same indexes used on the public Main Galaxy instance
hosted at http://usegalaxy.org, are in these wikis:
http://wiki.g2.bx.psu.edu/Admin/Data%20Integration
http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup
The "dbkey" that you will want to use is simply "hg19" for this genome,
should you use the rsync service.
Going forward, the galaxy-...@bx.psu.edu mailing list would be a good
choice for local install questions. The development community can help
solve more complex problems as they come up and/or you might be
interested in following discussions:
http://wiki.g2.bx.psu.edu/Support#Mailing_Lists
http://wiki.g2.bx.psu.edu/Mailing%20Lists
Hopefully this helps!
Jen
Galaxy team
On 9/26/12 12:47 PM, Kenneth Auerbach wrote:
Hi,
I'm getting this cuffmerge error on our local Galaxy instance. I assume
it is because it doesn't have the hg19 reference genome. Can you please
tell me how I would include into this Galaxy installation?
Thank you.
--
Jennifer Jackson
http://galaxyproject.org
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