Hi Humberto,
Yes, my apologies, this should have been included in the original reply.
The 'locus' field in the Cuffdiff files refers to a gene bound - not
individual transcripts. To get to the transcripts, the inputs to
Cuffdiff need to be accessed. If you used Cuffmerge, the "merged
transcri
Hello,
By no annotation, do you mean species-specific annotation (GTF) was not
used? And you want to compare to a protein database like Genbank NR or
RefSeq? Then these are the instructions. Please let us know if you had
something else in mind.
The sequence extraction can be done on Galaxy M
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