Great advice Sean!
Jianguang, this is the correct analysis - mapping the data to test the
actual insert size of the library as sequenced. The experimental notes
at SRA are just a starting place, the data is truth. A sample through
TopHat itself might produce more precise results. I suspect the
On Wed, Aug 15, 2012 at 11:13 AM, Du, Jianguang wrote:
> Dear All,
>
> I am analyzing the downloaded RNA-seq datasets. However I am not sure how
> much is Mean Inner Distance between Mate Pairs for these paired-end
> datasets.
>
> Take a paired-end RNA-seq dataset as an example, there is a descr
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