Hello Di,
The tool "Filter and Sort -> Select" can be used to select lines from a
.bed file for chr1 only. On the tool form, in text box labeled "the
pattern:", enter this term:
^chr1\s
Then sort with the tool "Sort" from the same tool group.
Hopefully this helps,
Best,
Jen
Galaxy team
On 12/5/11 3:23 PM, Di Nguyen wrote:
Hi all,
I have a a bed file that I would like sort for chromosome 1 ONLY? Would
you tell me the syntax to "select" lines that are chromosome 1 only
instead of 1 or 10,11-19?
Thank you very much,
Di Nguyen
U of Washington
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Jackson
http://usegalaxy.org
http://galaxyproject.org/wiki/Support
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
