Re: [galaxy-user] Megablast question

2012-04-11 Thread Jennifer Jackson
Hi Vasu, The three primary megablast databases available on the public main Galaxy instance are comprised of individual fragments/sequences of different types from many species (not assembled genomes): http://user.list.galaxyproject.org/Question-about-megablast-td4543260.html If you want to

Re: [galaxy-user] Megablast question

2012-02-16 Thread Noa Sher
Hi Scott I never used megablast so what i am writing is true of just any fasta file (so if there is anything quirky in megablast that i dont know about, apologies!): Take your fasta file and convert to tabular (under "fasta manipulation" - this will

Re: [galaxy-user] Megablast question

2012-02-16 Thread Dannon Baker
Noa has the right idea, but if you're asking for how to split a dataset into two non-overlapping halves you'll want to use Select First and Select Last, instead of random lines. Get an accurate line count from your file using the Line/Word/Character count tool and then split it right in the