Hello Thomas,
Using Tophat would be fine. To understand the parameters used, click on
the i icon in the job run's dataset box in the history. For certain
tools, this is also captured (line command) in the Info: field after
the job completes.
Take care,
Jen
Galaxy team
On 8/9/11 1:28 AM,
Hi,
I'm trying to map a data set containing 454 reads to a reference genome
using LASTZ alignment package in Galaxy. I'm following a workflow used for
Illumina reads with the only change in the alignment package, i'm using
LASTZ instead of bowtie/bwa. The following is the procedure please correct
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