Hello Steve,
Yes, this is true, many of the Interval Operations tools do not
interpret strand. Meaning that you would need to first filter the data
by strand, then perform the operation per strand to obtain an inner join
result.
Help, including links to screencasts:
http://wiki.g2.bx.psu.edu/Learn/Interval%20Operations
Best,
Jen
Galaxy team
On 11/3/11 1:13 PM, Stephen Eacker wrote:
Hello,
I using operate on genomic intervals on some data and it always seems to ignore
the strand information. Am I missing something or does "operate of genomic
intervals" disregard strand information? Is there a tool that does the inner join
function and takes into account strand information?
thanks,
Steve
Stephen Eacker, Ph.D.
Postdoctoral Fellow
Dawson Lab
Institute for Cell Engineering
Johns Hopkins Medical Institute
(443) 287-5605
seack...@jhmi.edu
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