Hi Bernardo,
The MLB Galaxy Support Team that runs this Galaxy site asks that they be
contacted at: gal...@raetschlab.org
(Noted on main home page and listed under "Help -> Email).
They would be the best experts to help you understand and use the tools
they have developed. More link/information to their project is in our
wiki (http://wiki.galaxyproject.org/PublicGalaxyServers -> Oqtans), but
starting with this specific project's support email as a first step
would be a good choice to get oriented.
Good luck with your project!
Jen
Galaxy team
On 12/29/12 2:49 AM, Bernardo Bello wrote:
Hi community,
I have just discovered a wonderful Galaxy server for RNA-Seq analysis:
Oqtanshttp://galaxy.raetschlab.org/. I am impressed by the huge quantity
of useful tools that they have integrated there.
I'm dealing with bacterial transcriptome analysis. We have the genome
sequence of this bacteria.
RNA samples are now been sequenced and I am designing a pipeline for
data analysis. I would like you to suggest me the tools that I
can/should use in order to analyse my data. My sequences come from Ion
Torrent platform. For each sample I have a fastQ file of about 3 million
sequences. They are less than 200 bp and have a mean of 150 bp. I you
need more information please ask me.
Thank you very much for your help.
Regards, Bernardo
--
*Bernardo Bello OrtÃ*
PhD student
CReSA-IRTA
Campus de Bellaterra-Universitat Autònoma de Barcelona
Edifici CReSA
08193 Bellaterra (Barcelona, Spain)
Tel.: 647 42 52 63 *www.cresa.es <http://www.cresa.es> *
*
*
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Jackson
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
