Dear Galaxy
for genome wide metagenomics, I wonder if there is a way to purge
conserved sequences. For example, if I have 99% of 10 million reads have
perfect alignment to more then 20 reference sequences, I want them to
go away. Inotherwords I only want unique sequences that align to only a
Hi Scott,
There isn't a pre-made tool to do this, but creating a workflow to do
some counts is possible.
Using a combination of tools in Text Manipulation ('Cut'), Join,
Subtract and Group ('Group'), and/or maybe Statistics ('Count'),
should allow you to work with a simplified tabular file
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