Hello William,
To use a custom reference genome, all you need to upload is the single
fasta file for the genome. Galaxy will do the rest and create indexes as
appropriate.
Hopefully this helps!
Thanks,
Jen
Galaxy team
On 2/6/12 11:51 AM, William Light wrote:
I recently tried to upload a custom made index for bowtie using
Filezilla as my FTP source, but I got an error message, I think due to
the autodetect for file type not recognizing this file type. Is there
something special that I should do to upload my six .ebwt files for my
reference?
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Jennifer Jackson
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
