Re: [galaxy-user] Remove unpaired reads from quality-filtered pared-end fastq files.

2013-01-09 Thread Jennifer Hillman-Jackson
Hi Hiroki, This question has come up before, and the best advice our team has to offer is that in most cases, filtering the data this way is unnecessary. Still - there are a few methods to do this, but they are tedious to do - one is to basically covert everything to tabular format, extract

Re: [galaxy-user] Remove unpaired reads from quality-filtered pared-end fastq files.

2013-01-08 Thread Carlos Borroto
Not the most convenient solution, but what I normally do in this situation is to combine the two files, filter then split again. There are tools for combining and splitting paired fastq files in Galaxy. Hope it helps, Carlos On Jan 8, 2013 12:55 AM, 柴田 弘紀 hshib...@gen.kyushu-u.ac.jp wrote: Hi