Hello Matt,
I am not sure what you mean by an annotated genome, would you be able to
send more details?
Meanwhile, I can let you know that the tools that use a reference genome
(custom or native) all expect a fasta formatted input and use the data
directly or create indexes from the data. An
Hi Matt,
The quickest way to use new genomes with most tools, including Bowtie,
is to use them as a custom reference genome. To do this, load the genome
in fasta format into your history.
Then, on the tool form (for Bowtie, will vary slightly between tools), set:
Will you select a re
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