Hello Maria,
Good tool groups to start with are: "NGS: SAM Tools" and "NGS: Indel
Analysis".
Once you have SNP/Indel the coordinates in BED/Interval format, the
tools in group "Operate on Genomic Intervals" can be used to compare the
two datasets.
Thanks for using Galaxy! Please let us know if you need more help,
Jen
Galaxy team
On 10/11/11 10:34 AM, Gabriela Ronquillo-Lopez wrote:
Hello,
I am new using Galaxy, I would like ask if it is possible to perform a
SNP and INDEL analysis between two SAM files (mutant and wt) with
Galaxy. If so, could anyone give a hint in how to proceed?
Many thanks for your help in advance,
Kind regards,
Maria G.
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
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