Hello Shalabh,
Galaxy is open source and available here:
http://bitbucket.org/galaxy/galaxy-central/src/
Check under tools to find:
tools/fastq/fastq_groomer.py/.xml
Other SOLiD specific tools are under:
tools/solid_tools/
The rest is organized in this same general way.
This wiki may be helpful:
http://galaxyproject.org/Admin/Tools/Tool%20Config%20Syntax
Hopefully this helps. Next time, you can just send to one list, and for
development questions, the best list would be galaxy-...@bx.psu.edu.
http://galaxyproject.org/Support
Best,
Jen
Galaxy team
On 8/10/11 11:23 AM, Shalabh Sharma wrote:
Hi,
I am trying to implement a SOLID pipeline for my solid data.
I really like the pipeline used in Galaxy, I was looking for conversion
of SOLID to fastq, but it didn't say that how it is achieved in Galaxy.
I know for bwa you can use solid2fasta.pl but for bowtie i did not find
any program or information.
I would really appreciate if you can help me with this, like how it is
achieved and where i can download the program used by Galaxy.
Thanks
Shalabh Sharma
-----------------------------
Shalabh Sharma
Scientific Computing Professional Associate (Bioinformatics Specialist)
Department of Marine Sciences
University of Georgia
Athens, GA 30602-3636
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
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