Hello Jörg,
We can add your genome to the list to be prioritized for inclusion, but
the quickest way to use this data in Galaxy is with the "custom genome"
option.
Instructions are in our wiki (below), but there are really only two
short steps:
1 - load the fasta record into your history
2 - select the reference genome from your history's list of
fasta datasets (instead of the pull-down native builds list)
http://wiki.g2.bx.psu.edu/Support#Custom_reference_genome
Hopefully this helps to get your analysis going!
Jen
Galaxy team
On 8/9/12 4:28 AM, Joerg Willenborg wrote:
Dear Sir or Madam,
with interest I followed up your Galaxy platform and I am planing a
Bowtie mapping with RNA-Seq data. Unfortunately the reference genome
I am looking for is not included in the drop down menu. Do you think it is
possible to add the Streptococcus suis P1/7 (NC_012925.1) genome to
the menu?
I would appreciate any reply on this email and thank you very much in advance
Kind regards
Jörg Willenborg
Joerg Willenborg, PhD
Institute of Microbiology
University of Veterinary Medicine Hannover
Bischofsholer Damm 15
D-30173 Hannover
Germany
Tel: +49511-8567595
e-mail: joerg.willenb...@tiho-hannover.de
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Jennifer Jackson
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
