Re: [galaxy-user] Text Manipulation

2012-08-27 Thread Jennifer Jackson
Hi Lee, There are a few options .. my guess is you are working with files like snpXXXCodingDbSnp? 1 - Using an expression such as this one will extract individual characters from the column, including the commas (treating the column's data like a string) c5.pop(1) = extracts the

Re: [galaxy-user] Text Manipulation Compute c1[1:c1.find(()] fails

2011-08-23 Thread Russell Bell
@lists.bx.psu.edu galaxy-user@lists.bx.psu.edu Subject: Re: [galaxy-user] Text Manipulation Compute c1[1:c1.find(()] fails Message-ID: 4e5282c4.3090...@bx.psu.edu Content-Type: text/plain; charset=windows-1252; format=flowed Hello Curtis, There is some more feedback from our developers. In your own

Re: [galaxy-user] Text Manipulation Compute c1[1:c1.find(()] fails

2011-07-22 Thread Jennifer Jackson
Hello Robert, This tool does sanitize many of the characters required to build this type of regular expression. Some changes to a few of the Text Manipulation tools have been discussed, but nothing is planned for the near term. For now, the most expedient solution is for you to download the

Re: [galaxy-user] Text Manipulation: Filter out duplicates (uniq) from an plain text file ?

2011-05-06 Thread Peter Cock
On Fri, May 6, 2011 at 3:16 PM, Roman Valls brainst...@nopcode.org wrote: Well, having similarly basic tools (in Galaxy) that can be performed on the commandline, such as sort or cut I just wondered how come a uniq is not there on the tool panel in some form/name. Thanks for the feedback Rory

Re: [galaxy-user] Text Manipulation: Filter out duplicates (uniq) from an plain text file ?

2011-05-06 Thread Guru Ananda
Hi Peter and Roman, The Count tool under Statistics section provides uniq-like functionality. If you run this tool by selecting all columns under Count occurrences of values in column(s) field, your output will contain one line per record, with the 1st column containing the number of occurrences

Re: [galaxy-user] Text Manipulation

2011-02-22 Thread Felix Hammer
Hi Peter, sounds nice, would be a great feature. For everyone else how is not using a custom server: if you are lucky you can use the trim tool on tabs to solve your problem. If you want to add text to the beginning or end of a column: - Use add column and add the text as a new column - Then use