Hello Soetkin,
The FASTX-toolkit added into Galaxy has a tool for this. Look under
"NGS: QC and manipulation -> FASTX-Toolkit for FASTQ data -> Clip
adapter sequences".
If this tool does not do exactly what you want, use the "Options -> Tool
search" (top of left tool panel) and enter "trim" to see the alternatives.
Hopefully one of these options will work out for you,
Best,
Jen
Galaxy team
On 11/8/11 8:15 AM, Soetkin Versteyhe wrote:
Hi!
Does anyone know if it is possible to trim sequencing adaptor sequences
away in Galaxy?
Thanks!
*Soetkin Versteyhe, PhD**
*PostDoc**
*
University of Copenhagen
*Faculty of Health Sciences
*The Novo Nordisk Foundation*
*Center for Basic Metabolic Research*
Integrative Physiology
Blegdamsvej 3B *
*2200 København N
Denmark*
**
*PHONE +45 35337116*
*_soetkin.verste...@sund.ku.dk__
_http://sund.ku.dk
http://metabol.ku.dk <http://metabol.ku.dk/>*
**
*
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___________________________________________________________
The Galaxy User list should be used for the discussion of
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