Hi Yang,
I am going to give you a method to do this - in short you'll be
splitting the dataset into three parts, altering two of them, then
merging the three final results datasets together. A workflow could be
extracted from the history once you have completed this method, saved
for future u
r the initial letters and not the entire words?
Thanks
Yang
- 原始邮件 -
发件人: "Jennifer Jackson"
收件人: "Yang Bi"
抄送: galaxy-user@lists.bx.psu.edu
发送时间: 星期一, 2014年 1 月 13日 下午 6:54:53
主题: Re: [galaxy-user] all FPKMs are 0 in the tmap files produced by cuffcompare
Hello Yang,
Glad the problem was isolated - the mismatched chromosomes is definitely
something to be fixed.
The tools in 'Text Manipulation" can help. The tool "Change Case of
selected columns" can change the case for you. Click on the pencil icon
after running the tool to reassign the datat
t;4.076844";
I checked the chromosome names and I realized that the BAM outputs use lower
cases for "RNAME", eg. "chr1" while my gff3 file uses initial capital letters
for "seqId", eg "Chr1". Could this be the problem? What is the fastest way to
convert
Hello,
It looks like the data is mapping as novel - not linked with the
reference annotation. There can be a few factors that can cause this to
occur for part of a dataset (often desirable) but when it occurs for an
entire dataset, there is often a data mismatch or parameter issue.
The first
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