Re: [galaxy-user] analysing pooled data with FreeBayes

2013-07-24 Thread Erik Garrison
Hi, I wanted to identify that I've resolved this issue. The problem is that the tool must consider the likelihoods of all possible un-phased genotypes with N alleles and M copies across P pools. This becomes quite a big number when N becomes large and M is large, as it might in low-complexity lo

Re: [galaxy-user] analysing pooled data with FreeBayes

2013-04-24 Thread Jennifer Jackson
Hi Nic, Yes, the program is running into a memory issue with this setting (confirmed by reviewing your bug report, thank you!). This is not an issue that is localized to Galaxy or even our server/cluster, but seems to be with the tool itself and it comes up on different systems under differe