Subject: Re: [galaxy-user] annotation file for cufflinks
I had a similar question, after i downloaded a bacterial ref genome GFF file
and loaded it into Galaxy, the "use reference annotation" feature of Cufflinks
kept telling it need to be the GTF file instead,
When I check the Cufflinks manu
I had a similar question, after i downloaded a bacterial ref genome
GFF file and loaded it into Galaxy, the "use reference annotation"
feature of Cufflinks kept telling it need to be the GTF file instead,
When I check the Cufflinks manual at http://cufflinks.cbcb.umd.edu/manual.html
It looks l
; Peng, Tao
Subject: Re: [galaxy-user] annotation file for cufflinks
If using Ensembl make sure it is properly formatted.
Vasu
--- On Tue, 8/30/11, Peng, Tao wrote:
From: Peng, Tao
Subject: [galaxy-user] annotation file for cufflinks
To: "Jennifer Jackson" , "galaxy-user"
D
In the cufflink site, they have annotation from ucsc,ncbi & ensemble. not sure
which one to download and then load into galaxy?
thanks,
Tao
Sent from my iPhone
On Aug 30, 2011, at 5:52 PM, "vasu punj" wrote:
> If using Ensembl make sure it is properly formatted.
> Vasu
>
> --- On Tue, 8/30/11
UCSC should work fine.
Vasu
--- On Tue, 8/30/11, Peng, Tao wrote:
From: Peng, Tao
Subject: RE: [galaxy-user] annotation file for cufflinks
To: "vasu punj" , "Jennifer Jackson" ,
"galaxy-user"
Date: Tuesday, August 30, 2011, 10:53 PM
Hi I have down-loaded U
If using Ensembl make sure it is properly formatted.
Vasu
--- On Tue, 8/30/11, Peng, Tao wrote:
From: Peng, Tao
Subject: [galaxy-user] annotation file for cufflinks
To: "Jennifer Jackson" , "galaxy-user"
Date: Tuesday, August 30, 2011, 1:52 PM
Hi jen and galaxy users, when I try to use cu
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