Hi Terry,
Started jobs will be in the queue - it is important to not stop and
restart. You want to leave them in the grey state while they wait their
turn to run. Restarting will only cause then to move to the back of the
queue again.
Galaxy has been under a very high NGS tool load for about a week, and
even though we have substantial resources dedicated to supporting
analysis on the public server, this has led to progressively longer
delays. Everyone has to wait when running jobs on the public instance
(even the Galaxy team!).
We are closely monitoring the recent surge in activity to ensure that
everyone has fair access on the main public instance. It may take up to
a full day or longer for a job to start running at this time.
If you or anyone reading this post is in a rush, a cloud instance would
be recommended: http://usegalaxy.org/cloud
Thanks for asking - checking in is always OK,
Best,
Jen
Galaxy team
On 4/27/12 10:45 AM, Furey, Terry wrote:
Hi-
I'm having trouble getting bwa to run on the main server. It seems stuck in the
"waiting to run" state. I have tried changing the assembly to align to, and
have tried re-running a previous workflow that ran fine a couple weeks ago. I even tried
running bowtie, and that seems stuck. Is something wrong with the NGS server? Other NGS
jobs (FastQC, filters, grooomer) seem to be fine.
Thanks,
Terry
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--
Jennifer Jackson
http://galaxyproject.org
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
